CV

See complete CV here

Education

• B.Eng. Software Engineering, East China Normal University, 2009
• M.Eng. Computer Software and Theory, East China Normal University, 2013
• Ph.D Computer Science, National University of Singapore, 2017

Work experience

• Postdoctoral Fellow, Genome Institute of Singapore, 09/2017 - 12/2018
• Postdoctoral Fellow, University College London, 01/2019 - 05/2023
• Surrey Future Fellow, University of Surrey, 06/2023 -

Publications

Reconstructing single-cell karyotype alterations in colorectal cancer identifies punctuated and gradual diversification patterns

Yannik Bollen, Ellen Stelloo, Petra van Leenen, Myrna van den Bos, Bas Ponsioen, Bingxin Lu, Markus J. van Roosmalen, Ana C. F. Bolhaqueiro, Christopher Kimberley, Maximilian Mossner, William C. H. Cross, Nicolle J. M. Besselink, Bastiaan van der Roest, Sander Boymans, Koen C. Oost, Sippe G. de Vries, Holger Rehmann, Edwin Cuppen, Susanne M. A. Lens, Geert J. P. L. Kops, Wigard P. Kloosterman, Leon W. M. M. Terstappen, Chris P. Barnes, Andrea Sottoriva, Trevor A. Graham, Hugo J. G. Snippert. Reconstructing single-cell karyotype alterations in colorectal cancer identifies punctuated and gradual diversification patterns. Nat Genet 53, 1187–1195 (2021). https://doi.org/10.1038/s41588-021-00891-2

Dynamic phenotypic heterogeneity and the evolution of multiple RNA subtypes in hepatocellular carcinoma: the PLANET study

Weiwei Zhai, Hannah Lai, Neslihan Arife Kaya, Jianbin Chen, Hechuan Yang, Bingxin Lu, Jia Qi Lim, Siming Ma, Sin Chi Chew, Khi Pin Chua, Jacob Josiah Santiago Alvarez, Pauline Jieqi Chen, Mei Mei Chang, Lingyan Wu, Brian K P Goh, Alexander Yaw-Fui Chung, Chung Yip Chan, Peng Chung Cheow, Ser Yee Lee, Juinn Huar Kam, Alfred Wei-Chieh Kow, Iyer Shridhar Ganpathi, Rawisak Chanwat, Jidapa Thammasiri, Boon Koon Yoong, Diana Bee-Lan Ong, Vanessa H de Villa, Rouchelle D Dela Cruz, Tracy Jiezhen Loh, Wei Keat Wan, Zeng Zeng, Anders Jacobsen Skanderup, Yin Huei Pang, Krishnakumar Madhavan, Tony Kiat-Hon Lim, Glenn Bonney, Wei Qiang Leow, Valerie Chew, Yock Young Dan, Wai Leong Tam, Han Chong Toh, Roger Sik-Yin Foo, Pierce Kah-Hoe Chow, Dynamic phenotypic heterogeneity and the evolution of multiple RNA subtypes in hepatocellular carcinoma: the PLANET study, National Science Review, Volume 9, Issue 3, March 2022, nwab192, https://doi.org/10.1093/nsr/nwab192

CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples

Bingxin Lu, Kit Curtius, Trevor A. Graham, Ziheng Yang, Chris P. Barnes. CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples. Genome Biol 24, 144 (2023). https://doi.org/10.1186/s13059-023-02983-0

Posters

GI-Cluster: Detecting genomic islands in newly sequenced microbial genomes via consensus clustering on multiple features

Computer program for verification of phylogenetic networks

Talks

Talk on GI-SVM

Talk on a program for verification of phylogenetic network models

Talk on a program to compute the soft Robinson–Foulds distance

Talk on GI-Cluster

Teaching

Teaching Assistant, Discrete Mathematics

Teaching Assistant, Programming Methodology